Publications

232. Bergmann, U; Stimulated X-ray Emission Spectroscopy, Photosynthesis Research, (2024) https://doi.org/10.1007/s11120-024-01080-y

231. Bhowmick, A; Simon, PS; Bogacz, I; Hussein, R; Zhang, M; Makita, H; Ibrahim, M; Chatterjee, R; Doyle, MD; Cheah, MH; Chernev, P; Fuller, FD; Fransson, T; Alonso-Mori, R; Brewster, AS; Sauter, NK; Bergmann, U; Dobbek, H; Zouni, A; Messinger, J; Kern, J; Yachandra, VK; Yano, J; Going around the Kok cycle of the water oxidation reaction with femtosecond X-ray crystallography, IUCrJ, 10, 642-655 (2023) ISSN: 2052-2525, https://doi.org/10.1107/S2052252523008928

230. Welke, N; Majernik, N; Ash, R; Moro, A; Agustsson, R; Manwani, P; Li, K; Sakdinawat, A; Aquila, A; Benediktovitch, A; Halavanau, A; Rosenzweig, J; Bergmann, U; C Pellegrini, C; Development of spinning- disk solid sample delivery system for high-repetition rate x-ray free electron laser experiments, Rev Sci Instrum 94, 103005 (2023) https://doi.org/10.1063/5.0168125

229. Ash, R; Abhari, Z; Candela, R; Welke, N; Murawski, J; Gardezi, SM; Venkatasubramanian, N; Munawar, M; Siewert; F; Sokolov, A; LaDuca, Z; Kawasaki, J; Bergmann, U; X-FAST: A versatile, high-throughput, and user-friendly XUV femtosecond absorption spectroscopy tabletop instrument, Rev Sci Instrum 94, 073004 (2023) https://doi.org/10.1063/5.0146137

228. Weakly, RB; Liekhus-Schmaltz, CE; Poulter, BI; Biasin, E; Alonso-Mori, R; Aquila, A; Boutet, S; Fuller, FD; Ho, PJ; Kroll, T; Loe, CM; Lutman, A; Zhu, D; Bergmann, U; Schoenlein, RW; Govind, N; Khalil, M; Revealing core-valence interactions in solution with femtosecond X-ray pump X-ray probe spectroscopy Nature Communications 14, 3384 (2023) https://doi.org/10.1038/s41467-023-39165-2

227. Wright, JC; Kohler, DD; U Bergmann, U; X-ray/Extreme Ultraviolet Floquet State Multidimensional Spectroscopy, an Analogue of Multiple Quantum Nuclear Magnetic Resonance, The Journal of Physical Chemistry Letters 14, 4908-4913 (2023) https://doi.org/10.1021/acs.jpclett.3c00778

226. Bhowmick, A; Hussein, R; Bogacz, I; Simon, PS; Ibrahim, M; Chatterjee, R; Doyle, MD; Cheah, MH; Fransson, T; Chernev, P; Kim, I-S; Makita, H; Dasgupta, M; Kaminsky, CJ; Zhang, M; Gätcke, J; Haupt, S; Nangca, II; Keable, SM; Aydin, AO; Tono, K; Owada, S; Gee, LB; Fuller, FD; Batyuk, A; Alonso-Mori, R; Holton, JM; Paley, DW; Moriarty, NW; Mamedov, F; Adams, PD; Brewster, AS; Dobbek, H; Sauter, NK; Bergmann, U; Zouni, A; Messinger, J; Kern, J; Yano, J; Yachandra, VK; Structural evidence for intermediates during O2 formation in photosystem II, Nature 617, 629–636 (2023) https://doi.org/10.1038/s41586-023-06038-z

225. Doyle, MD; Halavanau, A; Zhang, Y; Michine, Y; Everts, J; Fuller, F; Alonso-Mori, R; Yabashi, M; Inoue, I; Osaka, T; Yamada, J; Inubushi, Y; Hara, T; Kern, J; Yano, J; Yachandra, VK; Rohringer, N; Yoneda, H; Kroll, T; Pellegrini, C; Bergmann, U; Seeded stimulated X-ray emission at 5.9 keV, Optica 10, 513-519 (2023) https://doi.org/10.1364/OPTICA.485989

224. Bogacz, I; Makita, H; Simon, PS; Zhang, M; Doyle, MD; Chatterjee, R; Fransson, T; Weninger, C; Fuller, FD; Gee, LL; Sato, T; Seaberg, M; Alonso-Mori, R; Bergmann, U; Yachandra, VK; Kern, J; Yano, J; Room temperature X-ray absorption spectroscopy of metalloenzymes with drop-on-demand sample delivery at XFELs, Pure and Applied Chemistry (2023) https://doi.org/10.1515/pac-2023-0213

223. Zhang, H; Li, W; Essman, J; Quarti, C; Metcalf, I; Chiang, W-Y; Sidhik, S; Hou, J; Fehr, A; Attar, A; Lin, M- F; Britz, A; Shen, X; Link, S; Wang, X; Bergmann, U; Kanatzidis, MG; Katan, C; Even, J; Blancon, J-C; Mohite, AD; Ultrafast relaxation of lattice distortion in two-dimensional perovskites, Nature Physics 19, 545–550 (2023) https://doi.org/10.1038/s41567-022-01903-6

222. Simon, PS; Makita, H; Bogacz, I; Fuller, FD; Bhowmick, A; Hussein, R; Ibrahim, M; Zhang, M; Chatterjee, R; Cheah, MH; Chernev, P; Doyle, M; Brewster, AS; Alonso‐Mori, R; Sauter, NK; Bergmann, U; Dobbek, H; Zouni, A; Messinger, J; Kern, J; Yachandra, VK; Yano, J; Capturing the sequence of events during the water oxidation reaction in photosynthesis using XFELs, FEBS Letters 597, 30-37 (2023) https://doi.org/10.1002/1873-3468.14527

221. Vester, P; Kubicek, K; Assefa, TA; Biasin, E; Christensen, M; Dohn, AO; van Driel, TB; Galler, A; Gawelda, W; Harlang, TC; Henriksen, NE; Kjaer, KS; Kuhlmann, TS; Németh, Z, Nurekeyev, Z; Pápai, M; Vankó, G; Yavas, H; Bregenholt Zederkof, D; Bergmann, U; Nielsen, MM; Møller, KB; Haldrup, K; Bressler, C; Tracking structural solvent reorganization and recombination dynamics following e− photoabstraction from aqueous I− with femtosecond X-ray spectroscopy and scattering, J. Chem. Phys. 157, 224201 (2022) https://doi.org/10.1063/5.0107224

220. Edwards, NP; Bargar, JR; van Campen, D; van Veelen, A; Sokaras, D; Bergmann, U; Webb, SM; A new μ- High Energy Resolution Fluorescence Detection microprobe imaging spectrometer at the Stanford Synchrotron Radiation Lightsource beamline 6-2, Review of Scientific Instruments 93, 083101 (2022) https://doi.org/10.1063/5.0095229

219. Georgiou, R; J Sahle, CJ; Sokaras, D; Bernard, S; Bergmann, U; Rueff, J-P; Bertrand, L; X-ray Raman Scattering: A Hard X-ray Probe of Complex Organic Systems, Chemical Reviews 122, 12977 (2022) https://doi.org/10.1021/acs.chemrev.1c00953

218. Georgiou, R; Popelka-Filcoff, RS; Sokaras, D; Beltran, V; Bonaduce, I; Spangler, J; Cohen, SX; Lehmann, R; Bernard, S; Rueff, J-P; Bergmann, U; Bertrand, L; Disentangling the Chemistry of Australian Plant Exudates from a Unique Historical Collection, Proc Natl Acad Sci 119, e2116021119 (2022) https://doi.org/10.1073/pnas.2116021119

217. Zhang, Y; Kroll, Th; Weninger, C; Michine, Y; Fuller, FD; Zhu, D; Alonso-Mori, R; Sokaras, D; Lutman, A; Halavanau, A; Pellegrini, C; Benediktovitch, A; Yabashi, M; Inoue, I; Inubushi, Y; Osaka, T; Yamada, J; Babu, G; Salpekar, D; Sayed, FN; Ajayan, PM; Kern, J; Yano, J; Yachandra, VK; Yoneda, H; Rohringer, N; Bergmann, U; Generation of Intense Phase-Stable Femtosecond Hard X-ray Pulse Pairs, Proc Natl Acad Sci 119, e2119616119 (2022) https://doi.org/10.1073/pnas.2119616119

216. Ohmer, CJ; Dasgupta, M; Patwardhan, A; Bogacz, I; Kaminsky, C; Doyle, MD; Chen, PY-T; Keable, SM; Makita, H; Simon, PS; Massad, R; Fransson, T; Chatterjee, R; Bhowmick, A; Paley, DW; Moriarty, NW; Brewster, AS; Gee, LB; Alonso-Mori, R; Moss, F; Fuller, FD; Batyuk, A; Sauter, NK; Bergmann, U; Drennan, CL; Yachandra, VK; Yano, J; Kern, JF; Ragsdale SW; XFEL serial crystallography reveals the room temperature structure of methyl-coenzyme M reductase, Journal of Inorganic Biochemistry 230, 111768 (2022) https://doi.org/10.1016/j.jinorgbio.2022.111768

215. DePalma, RA; Oleinik, AA; Gurche, LP; Burnham, DA; Klingler, JJ; McKinney, CJ; Cichocki, FP; Larson, PL; Egerton, VM; Wogelius, RA; Edwards, NP; Bergmann, U; Manning, PL; Seasonal calibration of the end cretaceous Chicxulub impact event, Scientific Reports 11, 23704 (2021) https://doi.org/10.1038/s41598-021-03232-9

214. Fransson, Th; Alonso-Mori, R; Chatterjee, R; Cheah, MH; Ibrahim, M; Hussein, R; Zhang, M; Fuller, FD; Gul, S; Kim, I-S; Simon, PhS; Bogacz, I; Makita, H; de Lichtenberg, C; Song, S; Batyuk, A; Sokaras, D; Massad, R; Doyle, M; Britz, A; Weninger, C; Zouni, A; Messinger, J; Yachandra, VK; Yano, J; Kern, J; Bergmann, U; Effects of X-ray Free-Electron Laser Pulse Intensity on the Mn Kβ1,3 X-ray Emission Spectrum in Photosystem II -A Case Study for Metalloprotein Crystals and Solutions, Struct. Dyn. 8, 064302 (2021) https://doi.org/10.1063/4.0000130

213. Hussein, R; Ibrahim, M; Bhowmick, A; Simon, PS; Chatterjee, R; Lassalle, L; Doyle, M; Bogacz, I; Kim, I-S; Cheah, MH; Gul, S; de Lichtenberg, C; Chernev, P; Pham, CC; Young, ID; Carbajo, S; Fuller, FD; Alonso- Mori, R; Batyuk, A; Sutherlin, KD; Brewster, AS; Bolotovsky, R; Mendez, D; Holton, JM; Moriarty, NW; Adams, PD; Bergmann, U; Sauter, NK; Dobbek, H; Messinger, J; Zouni, A; Kern, J; Yachandra, VK; Yano, J; Structural Dynamics in the Water and Proton Channels of Photosystem II During the S2 to S3 Transition, Nature Communications 12, 6531 (2021) https://doi.org/10.1038/s41467-021-26781-z

212. Fuller, FD; Mustoe, C; Uwe Bergmann, U; Alonso-Mori, R; Sokaras, D; Inoue, I; Yamada, J; Taito Osaka, T; Analytic von Hamos geometry optimization and calibration, Proc. of SPIE 11838 (2021) https://doi.org/10.1117/12.2594019

211. Rabe, P; Kamps, JJAG; Sutherlin, KD; Linyard, JDS; Aller, P; Pham, CC; Makita, H; Clifton, I; McDonough, MA; Leissing, ThM; Shutin, D; Lang, PA; Butryn, A; Brem, J; Gul, S; Fuller, FD; Kim, I-S; Cheah, MH; Fransson, Th; Bhowmick, A; Young, ID; O’Riordan, L; Brewster, AS; Pettinati, I; Doyle, M; Joti, Y; Owada, S; Tono, K; Batyuk, A; Hunter, MS; Alonso-Mori, R; Bergmann, U; Owen, RL; Sauter, NK; Claridge, TDW; Robinson, CV; Yachandra, VK; Yano, J; Kern, J; Orville, AM; Schofield, CJ; X-ray free electron laser studies reveal correlated motion during isopenicillin N synthase catalysis, Science Advances 7, eabh0250 (2021) https://doi.org/10.1126/sciadv.abh0250

210. Ibrahim, M; Moriarty, NW; Kern, J; Holton, JM; Brewster, AS; Bhowmick, A; Bergmann, U; Zouni, A; Messinger, J; Yachandra, VK; Yano, J; Dobbek, H; Sauter, NK; Adams, PD; REPLY TO WANG ET AL.: Clear evidence of binding of Ox to the oxygen-evolving complex of photosystem II is best observed in the omit map, Proc Natl Acad Sci, 118, e2102342118 (2021); https://doi.org/10.1073/pnas.2102342118

209. Fuller, FD; Loukianov, A; Takanashi, T; You, D; Li, Y; Ueda, K; Fransson, Th; Yabashi, M; Katayama, T; Weng, T-C; Alonso-Mori, R; Bergmann, U; Kern, J; Yachandra, VK; Wernet, Ph; Yano J; Resonant X-ray Emission spectroscopy from broadband stochastic pulses at an X-ray free electron laser, Communications Chemistry 4, 84 (2021) https://doi.org/10.1038/s42004-021-00512-3 https://doi.org/10.1038/s42004-021-00512-3 208. Halavanau, A; Zhou, G; Emma, C; A. Lutman, A; Ding, Y; Aquila, A; Krasnykh, A; Nguyen, DC; Aldaba, V; Montagne, T; Decker, F.-J.; Mayes, C; Zhu, D; Meuren, S; Reis, D; Huang, Z; A. Marinelli, A; Glenzer, S; Pellegrini, C; Coco, D; Bergmann, U; Double Bunch FEL at LCLS-II, LCLS-II technical note: LCLS-II-20- 09, January 2021

207. Bergmann, U; Kern, J; Schoenlein, RW; Wernet, Ph; Yachandra, VK; Yano, J; Using X-ray free-electron lasers for spectroscopy of molecular catalysts and metalloenzymes, Nature Reviews Physics 3, 264 (2021) https://doi.org/10.1038/s42254-021-00289-3

206. Reinhard, ME; Mara, MW; Kroll, Th; Lim, H; Hadt, RG; Alonso-Mori, R; Chollet, M; Glownia, JM; Nelson, S; Sokaras, D; Kunnus, K; van Driel, TB; Hartsock, RW; Kjaer, KS; Weninger, C; Biasin, E; Gee, LB; Hodgson, KO; Hedman, B; Bergmann, U; Solomon, EI; Gaffney, KJ; Short-lived metal-centered excited state initiates iron-methionine photodissociation in ferrous cytochrome c, Nature Communications 12, 1086 (2021) https://doi.org/10.1038/s41467-021-21423-w

205. Britz, A; Attar, AR; Zhang, X; Chang, H-T; Nyby, C; Krishnamoorthy, A; Park, SH; Kwon, S; Kim, M; Nordlund, D; Sainio, S; Heinz, TF; Leone, SR; Lindenberg, AM; Nakano, A; Ajayan, P; Vashishta, P; Fritz, D; Lin, M-F; Bergmann, U; Carrier-specific dynamics in 2H-MoTe2 observed by femtosecond soft X-ray absorption spectroscopy using an X-ray free-electron laser, Structural Dynamics 8, 014501 (2021) https://doi.org/10.1063/4.0000048

204. Attar, AR; Chang, H-T; Britz, A; Zhang, X; Lin, M-F; Krishnamoorthy, A; Linker, Th; Fritz, D; Neumark, DM; Kalia, RK; Nakano, A; Ajayan, P; Vashishta, P; Bergmann, U; Leone, SR; Simultaneous Observation of Carrier-Specific Redistribution and Coherent Lattice Dynamics in 2H-MoTe2 with Femtosecond Core- Level Spectroscopy, ACS Nano 14, 11, 15829 (2020) https://dx.doi.org/10.1021/acsnano.0c06988

203. Gueriau, P; Lamsdell, JC; Wogelius, RA; Manning, PL; Egerton, VM; Bergmann, U; Bertrand, L; Denayer, J; A new Devonian euthycarcinoid reveals the use of different respiratory strategies during the marine-to- terrestrial transition in the myriapod lineage, R. Soc. Open Sci. 7, 201037 http://dx.doi.org/10.1098/rsos.201037

202. Alonso-Mori, R; Dimosthenis Sokaras, D; Cammarata, M; Ding, Y; Feng, Y; Fritz, D; Gaffney, KJ; Hastings, J; Kao, C-C; Lemke, HT; Maxwell, T; Robert, A; Schropp, A; Seiboth, F; Sikorski, M; Song, S; Weng, T-C; Zhang, W; Glenzer, S; Bergmann, U; Zhu, D; Femtosecond electronic structure response to high intensity XFEL pulses probed by iron X-ray emission spectroscopy, Scientific Reports 10, 16837 (2020) https://doi.org/10.1038/s41598-020-74003-1

201. Stepanic, OMC; Ward, J; Penner-Hahn, JE; Deb, A; Bergmann, U; DeBeer, S; Probing a silent metal: A Combined X-ray Absorption and Emission Spectroscopic Study of Biologically Relevant Zinc Complexes, Inorganic Chemistry 59, 13551 (2020) https://dx.doi.org/10.1021/acs.inorgchem.0c01931

200. Srinivas, V; Banerjee, R; Lebrette, H; Jones, JC; Aurelius, O; Kim, I-S; Pham, CC; Gul, S; Sutherlin, KD; Bhowmick, A; John, J; Bozkurt, E; Fransson, Th; Aller, P; Butryn, A; Bogacz, I; Simon, Ph; Keable, S; Britz, A; Tono, K; Kim, KS; Park, S-Y; Lee, SJ; Park, J; Alonso-Mori, R; Fuller, FD; Batyuk, A; Brewster, AS; Bergmann, U; Sauter, NK; Orville, AM; Yachandra, VK; Yano, J; Lipscomb, JD; Kern, J; Högbom, M; High Resolution XFEL Structure of the Soluble Methane Monooxygenase Hydroxylase Complex with its Regulatory Component at Ambient Temperature in Two Oxidation States, J. Am. Chem. Soc. 142, 14249, (2020) https://dx.doi.org/10.1021/jacs.0c05613

199. Kroll, Th; Weninger, C; Fuller, FD; Guetg, MW; Benediktovitch, A; Zhang, Y; Marinelli, A; Alonso-Mori, R; Aquila, A; Liang, M; Koglin, JE; Koralek, J; Sokaras, D; Zhu, D; Kern, J; Yano, J; Yachandra, VK; Rohringer, N; Lutman, A; Bergmann, U; Observation of Seeded Mn Kβ Stimulated X-ray Emission Using Two-color X-ray Free Electron Laser Pulses, Phys. Rev. Lett. 125, 037404 (2020) https://doi.org/10.1103/PhysRevLett.125.037404

198. Halavanau, A; Benediktovitch, A; Lutman, AA; DePonte, D; Cocco, D; Rohringer, N; Bergmann, U; Pellegrini, C; Design and Characteristics of a Population Inversion X-ray Laser Oscillator, Proc Natl Acad Sci 117, 15511 (2020) www.pnas.org/cgi/doi/10.1073/pnas.2005360117

197. Ibrahim, M; Fransson, Th; Chatterjee, R; Cheah, MH; Hussein, R; Lassalle, L; Sutherlin, K; Young, ID; Fuller, FD; Gul, S; Kim, I; Simon, PS; de Lichtenberg, C; Chernev, P; Bogacz, I; Pham, C; Orville, AM; Saichek, N; Northen, T; Batyuk, A; Carbajo, S; Alonso-Mori, R. Tono, K; Owada, S; Bhowmick, A; Bolotovsky, R; Mendez, D; Moriarty, NW; Holton, JM; Dobbek, H; Brewster, AS; Adams, PD; Sauter, NK; Bergmann, U; Zouni, A; Messinger, J; Kern, J; Yachandra, VK; Yano J; Untangling the Sequence of Events During the S2 → S3 Transition in Photosystem II: Implications for the Water Oxidation Mechanism, Proc Natl Acad Sci 117, 12624 (2020) https://doi.org/10.1073/pnas.2000529117

196. Xu, J; Babu, G; Kato, K; Robles Hernández FC; Puthirath, AB; Britz, A; Nordlund, D; Sainio, S; Bergmann, U; Ajayan, PM; High capacity Li/Ni rich Ni-Ti-Mo oxide cathode for Li-ion batteries, Solid State Ionics 345, 115172 (2020) https://doi.org/10.1016/j.ssi.2019.115172

195. Nascimento, DR; Zhang, Y; Uwe Bergmann, U; Govind, N; Near-Edge X‑ray Absorption Fine Structure Spectroscopy of Heteroatomic Core-Hole States as a Probe for Nearly Indistinguishable Chemical Environments, J. Chem. Phys. Lett. 11, 556-561 (2020) https://dx.doi.org/10.1021/acs.jpclett.9b03500

194. Bergmann U; Georgiou, R; Gueriau, P; Rueff, J-P; et Loïc Bertrand, L; Nouvelles spectroscopies Raman X du carbone pour les matériaux anciens, Reflets de la Physique n° 63, 22-25 (2019)

193. Bergmann, U; Archimedes ӓlteste Schriften – Eine Enthüllung mit der Synchrotron- Fluoreszenzbildgebung, in Die Welt im Durchblick Wunder moderner Röntgentechnologie, Uwe Busch, Wilfried Rosendahl, (Hrsg.), wbg Theiss, (2019) ISBN: 978-3-8062-3995-9

192. Edwards, NP; Webb, SM; Bergmann, U; Photons, Folios, and Fossils: The X-ray Imaging and Spectroscopy Program of Ancient Materials at SSRL,Synchrotron Radiation News 32:6, 22-28 (2019) https://doi.org/10.1080/08940886.2019.1680211

191. Zhang, Y; Bergmann, U; Schoenlein, R; Khalil, M; Govind, N; Double Core Hole Valence-to-Core X-ray Emission Spectroscopy: A Theoretical Exploration Using Time-Dependent Density Functional Theory, J. Chem. Phys. 151, 144114 (2019) https://doi.org/10.1063/1.5111141

190. Bergmann, U; Bertrand, L; Edwards, NP; Manning, PL; Wogelius, RA; Chemical Mapping of Ancient Artifacts and Fossils with X-Ray Spectroscopy. In: Jaeschke E., Khan S., Schneider J., Hastings J. (eds) Synchrotron Light Sources and Free-Electron Lasers. Springer, Cham (2019) https://doi.org/10.1007/978-3-319-04507-8_77-1

189. Li, L; Lin, M-F; Zhang, X; Britz, A; Krishnamoorthy, A; Ruru Ma, R; Kalia, RK; Nakano, A; Vashishta, P; Ajayan, P; Hoﬀmann, MC; Fritz, DM; Bergmann, U; Prezhdo OV; Phonon-Suppressed Auger Scattering of Charge Carriers in Defective Two-Dimensional Transition Metal Dichalcogenides, Nano Lett. 19, 6078−6086 (2019) https://doi.org/10.1021/acs.nanolett.9b02005

188. Henthorn, J; Arias, R; Koroidov, S; Kroll, Th; Sokaras, D; Bergmann, U; Rees, D; DeBeer, S; Localized Electronic Structure of Nitrogenase FeMoco Re-vealed by Selenium K-edge High Resolution X-ray Absorption Spectroscopy, J. Am. Chem. Soc. 141, 13676−13688 (2019) https://doi.org/10.1021/jacs.9b06988

187. Georgiou, R; Gueriau, P; Sahle, CJ; Bernard, S; Mirone, A; Garrouste, R; Bergmann, U; Rueff, J-P; Bertrand, L; Carbon speciation in organic fossils using 2D to 3D x-ray Raman multispectral imaging, Science Advances 5, eaaw5019 (2019) https://doi.org/10.1126/sciadv.aaw5019

186. Warke, MR; Edwards, NP; Wogelius, RA; Manning, PL; Bergmann, U; Egerton, VM; Kimball, KC; Garwood, RJ; Beukesh, NJ; Schröder S; Decimeter-scale mapping of carbonate-controlled trace element distribution in Neoarchean cuspate stromatolites, Geochimica et Cosmochimica Acta 261, 56-75 (2019) https://doi.org/10.1016/j.gca.2019.07.004

185. Krishnamoorthy, A; Lin, M-F; Zhang, X; Weninger, C; Ma, R; Britz, A; Tiwary, C; Kochat, V; Apte, A; Yang, J; Park, S; Li, R; Shen, X; Wang, X; Kalia, R; Nakano, A; Shimojo, F; Fritz, D; Bergmann, U; Ajayan, P; Vashishta, P; Optical Control of Non-Equilibrium Phonon Dynamics, Nano Lett. 19, 4981−4989 (2019) https://doi.org/10.1021/acs.nanolett.9b01179

184. Manning, PL; Edwards, NP; Bergmann, U; Anné, J; Sellers, WI; van Veelen, A; Sokaras, D; Egerton, VM; Alonso-Mori, R; Ignatyev, K; van Dongen, BE; Wakamatsu, K; Ito, S; Knoll, F; Wogelius, RA; Pheomelanin pigment remnants mapped in fossils of extinct mammals, Nature Communications 10, 2250 (2019) https://doi.org/10.1038/s41467-019-10087-2

183. Bergmann, U; Yachandra, V; Yano, J; How ultrafast X-ray pulses can reveal hidden secrets of photosynthesis, The Biochemist 41, 24-29 (2019)

182. Chatterjee, R; Weninger, C; Loukianov, A; Gul, S; Fuller, FD; Cheah, MH; Fransson, T; Pham, CC; Nelson, S; Song, S; Britz, A; J. Messinger, J; Bergmann, U; Alonso-Mori, R; Yachandra, VK; Kern J; Yano J; XANES and EXAFS of dilute solutions of transition metals at XFELs, J. Synchrotron Rad. 261716–1724 (2019) https://doi.org/10.1107/S1600577519007550

181. Miyashita, T; Coatesa, MI; Farrar R; Larson, P; Manning, PL; Wogelius, RA; Edwards, NP; Anné, J; Bergmann, U; Palmer AR; Currie PJ; Hagfish from the Cretaceous Tethys Sea and a reconciliation of the morphological–molecular conflict in early vertebrate phylogeny, Proc Natl Acad Sci 116, 2146-51 (2019) https://doi.org/10.1073/pnas.1814794116

180. Anné, J; Wogelius, RA; Edwards, NP; van Veelen, A; Buckley, M; Sellers, WI; Bergmann, U; Sokaras, D; Alonso-Mori, R; Harvey, VL; Egerton, VM; Phillip L. Manning PL; Morphological and chemical evidence for cyclic bone growth in a fossil hyaena, J. Anal. At. Spectrom. 33, 2062-2069 (2018) https://doi.org/10.1039/c8ja00314a

179. Kern, J; Chatterjee, R; Young, ID; Fuller, FD; Lassalle, L; Ibrahim, M; Gul, S; Fransson, Th; Brewster, AS; Alonso-Mori R; Hussein, R; Zhang, M; Douthit, L; de Lichtenberg. C; Cheah, MH; Shevela, D; Wersig, J; Seufert I; Sokaras, D; Pastor, E; Weninger, C; Kroll, Th; Sierra, RG; Aller, P; Butryn, A; Orville, AM; Liang, M; Batyuk, A; Koglin, JE; Carbajo, S; Boutet, S; Moriarty, NW; Holton, JM; Dobbek, H; Adams, PD; Bergmann, U; Sauter, NK; Zouni, A; Messinger, J; Yano, J; Yachandra, VK; Structures of the intermediates of Kok’s photosynthetic water oxidation clock, Nature 563, 421-425 (2018) https://doi.org/10.1038/s41586-018-0681-2

178. Kubin, M; Meiyuan Guo, M; Kroll, Th; Löchel, H; Källman, E; Baker, ML; Mitzner, R; Gul, S; Kern, J; Föhlisch, A; Erko, A; Bergmann, U; Yachandra, VK; Yano, J; Lundberg, M; Wernet, Ph; Probing the Oxidation State of Transition Metal Complexes: A Case Study on How Charge and Spin Densities Determine Mn L-Edge X-ray Absorption Energies, Chem. Sci. 9, 6813-6829 (2018) https://doi.org/10.1039/c8sc00550h

177. Edwards, NP; Webb, SM; Krest, CM; van Campen, D; Manning, PL; Wogelius, RA; Bergmann, U; A new Synchrotron Rapid Scanning X-ray Fluorescence (SRS-XRF) imaging station at SSRL beam line 6-2, J. Synchrotron Rad. 25, 1565-73 (2018) https://doi.org/10.1107/S1600577518010202

176. Fransson, Th; Chatterjee, R; Fuller, FD; Gul, S; Weninger, C; Sokaras, D; Kroll, Th; Alonso-Mori, R; Bergmann, U; Kern, J; Yachandra VK; Junko Yano, Y; X-ray Emission Spectroscopy as an in Situ Diagnostic Tool for X-ray Crystallography of Metalloproteins Using an X-ray Free-Electron Laser,Biochemistry 57, 4629–4637 (2018) https://doi.org/10.1021/acs.biochem.8b00325

175. Kroll, Th; Weninger, C; Alonso-Mori, R; Sokaras, D; Zhu, D; Mercadier, L; Majety, VP; Marinelli, A; Lutman, AA; Guetg, MW; Decker, F-J; Boutet, S; Aquila, A; Koglin, J; Koralek, J; DePonte, DP; Kern, J; Fuller, FD; Pastor, E; Fransson, Th; Zhang, Y; Yano, J; Yachandra, VK; Rohringer, N; Bergmann, U; Stimulated X-ray Emission Spectroscopy in Transition Metal Complexes, Phys. Rev. Lett. 120, 133203 (2018) https://doi.org/10.1103/PhysRevLett.120.133203

174. Adam Gibson A; Piquette, KY; Bergmann, U; Christens‑Barry, W; Davis, G; Endrizzi, M; Fan, S; Farsiu, S; Fitzgerald, A; Grifths, J; Jones, C; Li, G; Manning, PL; Maughan Jones, C; Mazza, R; Mills, D; Modregger, P; Munro, PRT; Olivo, A; Stevenson, A; Venugopal, B; Wallace, V; Wogelius, RA; Toth, MB; Terras, M; An assessment of multimodal imaging of subsurface text in mummy cartonnage using surrogate papyrus phantoms, Herit. Sci. 6:7 (2018) https://doi.org/10.1186/s40494-018-0175-4

173. Guetg, MW; Lutman, AA; Ding, Y; Maxwell, TJ; Decker, F-J; Bergmann, U; Huang, Z; Generation of High- Power High-Intensity Short X-Ray Free-Electron-Laser Pulses, Phys. Rev. Lett. 120, 014801 (2018) https://doi.org/10.1103/PhysRevLett.120.014801

172. Lin, M-F; Verkamp, MA; Leveillee, J; Ryland, ES; Benke, K; Zhang, K; Weninger, C; Shen, X; Li, R; Fritz, DM; Bergmann, U; Wang, X; Schleife, A; Vura-Weis, J; Carrier-Specific Femtosecond XUV Transient Absorption of PbI2 Reveals Ultrafast Nonradiative Recombination, J. Phys. Chem. C 121, 27886-27893 (2017) https://doi.org/10.1021/acs.jpcc.7b11147

171. Lin, M-F; Kochat, V; Krishnamoorthy, A; Bassman, L; Clemens Weninger, C; Zheng, Q; Zhang, X; Apte, A; Tiwary, CS; Shen, X; Li, R; Kalia, R; Ajayan, P; Nakano, A; Vashishta, P; Shimojo, F; Wang, X; Fritz, DM; Bergmann, U; Ultrafast non-radiative dynamics of atomically thin MoSe2, Nature Communications 8, 1745 (2017) https://doi.org/10.1038/s41467-017-01844-2

170. Kubin, M; Kern, J; Gul, S; Kroll, Th; Chatterjee, R; Löchel, H; Fuller, FD; Sierra, RG; Quevedo, W; Weniger, C; Rehanek, J; Firsov, A; Laksmono, H; Weninger, C; Alonso-Mori, R; Nordlund, DL; Lassalle-Kaiser, B; Glownia, M; Krzywinski, J; Moeller, S; Turner, JJ; Minitti, MP; Dakovski, GL; Koroidov, S; Kawde, A; Kanady, JS; Tsui, EY; Suseno, S; Han, Z; Hill, E; Taguchi, T; Borovik, AS; Agapie, Th; Messinger, J; Erko, A; Föhlisch, A; Bergmann, U; Mitzner, R; Yachandra, VK; Yano, J; Wernet; Ph; Soft X-ray Absorption Spectroscopy of Metalloproteins and High-Valent Metal-Complexes at Room Temperature Using Free- Electron Lasers, Structural Dynamics 4, 053407 (2017) https://doi.org/10.1063/1.4986627

169. Gueriau, P; Rueff, J-P; Bernard, S; Kaddissy, JA; Goler, S; Sahle, Ch; Sokaras, D; Wogelius, RA; Maning, PL; Bergmann, U; Bertrand, L; Noninvasive Synchrotron-Based X‑ray Raman Scattering Discriminates Carbonaceous Compounds in Ancient and Historical Materials, Analytical Chemistry 89, 10819 (2017) https://doi.org/10.1021/acs.analchem.7b02202

168. X-ray Free Electron Lasers – Applications to Materials, Chemistry and Biology, Royal Society of Chemistry, Editors: Uwe Bergmann, Vittal K. Yachandra, Junko Yano, Copyright: 2017, Print ISBN: 978-1- 84973-100-3, EPUB eISBN: 978-1-78801-202-7, ISSN: 2044-0774, Pages: 464, Publication date: 15 Aug 2017. Link: http://dx.doi.org/10.1039/9781782624097.

167. Mara, MW; Hadt, RG; Reinhard, ME; Kroll, Th; Lim, H; Hartsock, RW; Alonso-Mori, R; Chollet, M; Glownia, JM; Nelson, S; Sokaras, D; Kunnus, K; Hodgson, KO; Hedman, B; Bergmann, U; Gaffney, KJ; Solomon, EI; Metalloprotein entatic control of ligand-metal bonds quantified by ultrafast x-ray spectroscopy,Science 356, 1276 (2017) https://doi.org/10.1126/science.aam6203

166. Kjær, KS; Zhang, W; Alonso-Mori, R; Bergmann, U; Chollet, M; Hadt, RG; Hartsock, RW; Harlang, T; Kroll, Th; Kubiček, K; Lemke, HT; Liang, HV; Liu, Y; Nielsen, MM; Robinson, JS; Solomon, EI; Sokaras, D; van Driel, TB; Weng, T-C; Zhu, D; Persson, P; Wärnmark, K; Sundström, V; Gaffney, KJ; Ligand manipulation of charge transfer excited state relaxation and spin crossover in [Fe(2,2′-bipyridine)2(CN)2], Structural Dynamics 4, 044030 (2017) https://doi.org/10.1063/1.4985017

165. Fuller, FD; Sheraz Gul, S; Chatterjee, R; Burgie, ES; Young,ID; Lebrette, H; Srinivas, V; Brewster, AS; Michels-Clark, T; Clinger, JA; Andi, B; Ibrahim, M; Pastor, E; de Lichtenberg, C; Hussein, R; Pollock, CJ; Zhang, M; Stan, CA; Kroll, Th; Fransson, Th; Weninger, C; Kubin, M; Aller, P; Lassalle, L; Bräuer, Ph; Miller, MD; Amin, M; Koroidov, S; Roessler, CG; Allaire, M; Sierra, RG; Docker, PT; Glownia, JM; Nelson, S; Koglin, JE; Zhu, D; Chollet, M; Song, S; Lemke, H; Liang, M; Sokaras, D; Alonso-Mori, R; Zouni, A; Messinger, J; Bergmann, U; Boal, AK; Bollinger Jr, JM; Krebs, C; Högbom, M; Phillips Jr, GN; Vierstra, RD; Sauter, NK; Orville, AM; Kern, J; Yachandra, VK; Yano, J; Drop-on-demand sample delivery for studying biocatalysts in action at X-ray free-electron lasers, Nature Methods 14, 443 (2017) https://doi.org/10.1038/nmeth.4195

164. Young, ID; Ibrahim, M; Chatterjee, R; Gul, S; Fuller, F; Koroidov, S; Brewster, AS; Tran R; Alonso-Mori R; Kroll, Th; Michels-Clark, T; Laksmono, H; Sierra, RG; Stan, CA; Hussein, R; Zhang, M; Douthit, L; Kubin, M; de Lichtenberg, C; Vo Pham, L; Nilsson, H; Cheah, MH; Shevela, D; Saracini, C; Bean, MA; Seuffert, I; Sokaras, D; Weng, T-C; Pastor, E; Weninger, C; Fransson, Th; Lassalle, L; Bräuer, Ph; Aller, P; Docker, PT; Andi, B; Orville, AM; Glownia, JM; Nelson, S; Sikorski, M; Zhu, D; Hunter, MS; Lane, TJ; Aquila, A; Koglin, JE; Robinson, J; Liang, M; Boutet, S; Lyubimov, AY; Uervirojnangkoorn, M; Moriarty, NW; Liebschner, D; Afonine, PV; Waterman, DG; Evans, G; Wernet, Ph; Dobbek, H; Weis, WI; Brunger, AT; Zwart, PH; Adams, PD; Zouni, A; Messinger, J; Bergmann, U; Sauter, NK; Jan Kern, J; Yachandra, VK; Yano J; Structure of photosystem II and substrate binding at room temperature, Nature 540, 453 (2016) https://doi.org/10.1038/nature20161

163. Edwards, NP; van Veelen, A; Anné, J; Manning, PL; Bergmann, U; Sellers WI; Egerton, VM; Sokaras, D; Alonso-Mori, R; Wakamatsu, K; Ito, S; Wogelius, RA; Elemental characterisation of melanin in feathers via synchrotron X-ray imaging and absorption spectroscopy, Scientific Reports 6, 34002 (2016) https://doi.org/10.1038/srep34002

162. DeBeer, S; Bergmann, U; X-Ray Emission Spectroscopic Techniques in Bioinorganic Applications in Encyclopedia of Inorganic and Bioinorganic Chemistry, ed R.A. Scott, John Wiley: Chichester. DOI: 10.1002/9781119951438.eibc2158. (Published 15 September, 2016).

161. Kroll, T; Kern, J; Kubin, M; Ratner, D; Gul, S; Fuller, FD; Löchel, H; Krzywinski, J; Lutman, A; Ding, Y; Dakovski, GL; Moeller, S; Turner, JJ; Alonso-Mori, R; Nordlund, DL; Rehanek, J; Weniger, C; Firsov, A; Brzhesinskaya, M; Chatterjee, R; Lassalle-Kaiser, B; Sierra, RG; Lakshmono, H; Hill, E; Borovik, A; Erko, A; Föhlisch, A; Mitzner, R; Yachandra, VK; Yano, J; Wernet, Ph; Bergmann, U; X-ray absorption spectroscopy using a self-seeded soft X-ray free-electron laser, Optics Express 24, 22469 (2016). https://doi.org/10.1364/OE.24.022469

160. Zhang, W; Kjær, KS; Alonso-Mori, R; Bergmann, U; Chollet, M; Fredin, LA; Hadt, RG; Hartsock, RW; Harlang, T; Kroll, T; Kubicek, K; Lemke, HT; Liang, HW; Liu, Y; Nielsen, MM; Persson, P; Robinson, JS; Solomon, EI; Sun, Z; Sokaras, D; van Driel, TB; Weng, T-C; Zhu, D; Wärnmark, K; Sundström V; Gaﬀney, KJ; Manipulating charge transfer excited state relaxation and spin crossover in iron coordination complexes with ligand substitution, Chem. Sci. 8, 515-523 (2017) https://doi.org/10.1039/c6sc03070j

159. Sauter, NK; Echols, N; Adams, PD; Zwart, PH; Kern, J; Brewster, AS; Koroidov, S; Alonso-Mori, R; Zouni, A; Messinger, J; Bergmann, U; Yano, J; Yachandra, VK; No observable conformational changes in PSII, Nature 533, E1 (2016) https://doi.org/10.1038/nature17983

158. Alonso Mori, R; Asa, K; Bergmann, U; Brewster, AS; Chatterjee, R; Cooper, JK; Frei, HM; Fuller, FD; Goggins, E; Gul, S; Fukuzawa, H; Iablonskyi, D; Ibrahim, M; Katayama, T; Kroll, Th; Kumagai, Y; McClure, BA; Messinger, J; Motomura, K; Nagaya, K; Nishiyama, T; Saracini, C; Sato, Y; Sauter, NK; Sokaras, D; Takanashi, T; Togashi, T; Ueda, K; Weare, WW; Weng, T-C; Yabashi, M; Yachandra, VK; Young, ID; Zouni, A; Kern, J; Yano, J; Towards Characterization of Photo-Excited Electron Transfer and Catalysis in Natural and Artificial Systems Using XFELs, Faraday Discussions 194, 621-638, (2016) https://doi.org/10.1039/C6FD00084C

157. Chatterjee, R; Han, G; Kern, J; Gul, S; Fuller, FD; Garachtchenko, A; Young, ID; Weng, T-C; Nordlund, D; Alonso-Mori, R; Bergmann, U; Sokaras, D; Hatakeyama, M; Yachandra, VK; Yano, J; Structural changes correlated with magnetic spin state isomorphism in the S2 state of the Mn4CaO5 cluster in the oxygen- evolving complex of photosystem II, Chem. Sci. 7, 5236-5248 (2016).

156. Haldrup, K; Gawelda, W; Abela, R; Alonso-Mori, R; Bergmann, U; Bordage, A; Cammarata, M; Canton, S; Dohn, A; van Driel, T; Fritz, D; Galler, A; Glatzel, P; Harlang, T; Kjær, K; Lemke, H; Moller, K; Németh, Z; Pápai, M; Sas, N; Uhlig, J; Zhu, D; Vankó, G; Sundstrom, V; Nielsen, M; Bressler, C; Observing Solvation Dynamics with Simultaneous Femtosecond X-ray Emission Spectroscopy and X-ray Scattering, Journal of Physical Chemistry B 120, 1158-1168 (2016).

155. Bertrand, L; Bernard, S; Federica Marone, Thoury, M; Reiche, I; Gourrier, A; Sciau, Ph; Bergmann, U; Emerging Approaches in Synchrotron Studies of Materials from Cultural and Natural History Collections, Topics in Current Chemistry 374, 7 (2016) https://doi.org/10.1007/s41061-015-0003-1

154. Harazim, D; McIlroy, D; Edwards, NP; Wogelius, RA; Manning, PL; Poduska, KM; Layne, GD; Sokaras, D; Alonso-Mori, R; Bergmann, U; Bioturbating animals control the mobility of redox-sensitive trace elements in organic-rich mudstone, Geology 43, 1007-1010 (2015).

153. Barden, HE; Julia Behnsen, J; Bergmann, U; Melanie J. Leng, MJ; Manning, PL; Withers, PJ; Wogelius, RA; van Dongen, BE; Geochemical Evidence of the Seasonality, Affinity and Pigmenation of Solenopora jurassica, PLOS ONE | DOI:10.1371/journal.pone.0138305 September 14, (2015).

152. Alonso-Mori, R; Sokaras, D; Zhu, D; Kroll, Th; Chollet, M; Feng, Y; Glownia, JM; Kern, J; Lemke, HT; Nordlund, D; Robert, A; Sikorski, M; Sanghoon Song, S; Weng, T-S; Bergmann, U; Photon- in photon-out hard X-ray spectroscopy at the Linac Coherent Light Source, J. Synchrotron Rad. 22 612-620 (2015).

151. Gul, S; Wei, J; Ng, D; Alonso-Mori, R; Kern, J; Sokaras, D; Anzenberg, E; Lassalle-Kaiser, B; Gorlin, Y; Weng, T-C; Zwart, PH; Zhang, JZ; Bergmann, U; Yachandra, VK; Jaramillo, Th; Yano, J; Simultaneous detection of electronic structure changes from two elements of a bifunctional catalyst using wavelength-dispersive X-ray emission spectroscopy and in situ electrochemistry, Phys. Chem. Chem. Phys. 17, 8901 (2015).

150. Egerton, VM; Wogelius, RA; Norell, MA; Edwards, NP; Sellers, WI; Bergmann, U; Sokaras, D; Alonso-Mori, R; Ignatyev, K; van Veelen, A; Anné, J; van Dongen, B; Knoll, F; Manning, PL; The mapping and differentiation of biological and environmental elemental signatures in the fossil remains of a 50 million year old bird, J. Anal. At. Spectrom. 30, 627-634 (2015).

149. Sellberg, JA; McQueen, TA; Laksmono, H; Schreck, S; Beye, M; DePonte, DP; Kennedy, B; Nordlund, D; Sierra, RG; Schlesinger, D; Tokushima, T; Zhovtobriukh, I; Eckert, S; Segtnan, VH; Ogasawara, H; Kubicek, K; Techert, S; Bergmann, U; Dakovski, GL; Schlotter, WF; Harada, Y; Bogan, MJ; Wernet, Ph; Föhlisch, A; Pettersson, LGM; Nilsson, A; X-ray emission spectroscopy of bulk liquid water in “no-man’s land, J. Chem. Phys. 142, 044505 (2015).

148. Barden HE; Bergmann, U; Edwards, NP; Egerton, VM; Manning PL; Perry S; van Veelen A; Wogelius RA; van Dongen BE; Bacteria or melanosomes? A geochemical analysis of micro-bodies on a tadpole from the Oligocene Enspel Formation of Germany, Palaeobiodiversity and Palaeoenvironments 95, 33 – 45 (2015).

147. Schreck, S; Martin Beye, M; Sellberg, JA; McQueen, T; Laksmono, H; Kennedy, B; Eckert, S; Schlesinger, D; Nordlund, D; Ogasawara, H; Sierra, RG; Segtnan, VH; Kubicek, K; Schlotter, WF; Dakovski, GL; Moeller, SP; Bergmann, U; Techert, S; Pettersson, LGM; Wernet, Ph; Bogan, MJ; Harada, Y; Nilsson, A; Föhlisch, A; Reabsorption of Soft X-Ray Emission at High X-Ray Free-Electron Laser Fluences Phys. Rev. Lett. 113 153002 (2014).

146. Kern J; Tran R; Alonso-Mori R; Koroidov, S; Echols, N; Hattne, J; Ibrahim, M; Gul, S; Laksmono, H; Sierra, RG; Gildea, RJ; Han, G; Hellmich, J; Lassalle-Kaiser, B; Chatterjee, R; Brewster, AS; Stan, CA; Glöckner, C; Lampe, A; DiFiore, D; Milathianaki, D; Fry, AR; Seibert, MM; Koglin, JE; Gallo, E; Uhlig, J; Sokaras, D; Weng, T-C; Zwart, PH; Skinner, DE; Bogan, MJ; Messerschmidt, M; Glatzel, P; Williams, GJ; Boutet, S; Adams, PD; Zouni, A; Messinger, J; Sauter, NK; Bergmann, U; Yano, J; Yachandra VK; Taking snapshots of photosynthetic water oxidation using femtosecond X-ray diffraction and spectroscopy, Nature Communications 5 4371 (2014).

145. Manning, PL; Wogelius, RA; van Dongen, BE; Lyson, TR; Bergmann, U; Webb, S; Buckley, M; Egerton, VM; Sellers, WI; The role and biochemistry of melanin pigment in the exceptional preservation of hadrosaur skin. In: Eberth, D.A., Evans, D.C, editor(s). Hadrosaurs. Bloomington, Indiana: Indiana University Press; p. 600-610 (2014).

144. Tran, R; Kern, J; Hattne, J; Koroidov, S; Hellmich, J; Alonso-Mori, R; Sauter, NK; Bergmann, U; Messinger, J; Zouni, A; Yano J; Yachandra VK; The Mn4Ca photosynthetic water-oxidation catalyst studied by simultaneous X-ray spectroscopy and crystallography using an X-ray free-electron laser, Phil. Trans. R. Soc. B 369 20130324 (2014).

143. Kern, J; Hattne, J; Tran, R; Alonso-Mori, R; Laksmono, H; Gul, S; Sierra, RG; Rehanek, J; Erko, A; Mitzner, R; Wernet, Ph; Bergmann, U; Sauter, NK; Yachandra VK; Yano J; Methods development for diffraction and spectroscopy studies of metalloenzymes at X-ray free-electron lasers, Phil. Trans. R. Soc. B 369 20130590 (2014).

142. Waluyo, I; Nordlund, D; Bergmann, U; Schlesinger, D; Pettersson, LGM; Nilsson, A; A different view of structure-making and structure-breaking in alkali halide aqueous solutions through x-ray absorption spectroscopy, J. Chem. Phys. 140, 244506 (2014).

141. Zhang, W; Alonso-Mori, R; Bergmann, U; Bressler, C; Chollet, M; Galler, A; Gawelda, W; Hadt, RG; Hartsock, RW; Thomas Kroll, T; Kjær, KS; Kubicek, K; Lemke, HT; Liang, HW; Meyer, DA; Nielsen, MM; Purser, C; Robinson, JS; Solomon, EI; Sun Z; Sokaras, D; van Driel, TB; Vanko, G; Weng, T-C; Zhu D; Gaffney, KJ; Tracking excited-state charge and spin dynamics in iron coordination complexes, Nature 509, 345, (2014).

140. Anné, J; Edwards, NP; Wogelius, RA; Tumarkin-Deratzian, AR; WI; van Veelen, A; Bergmann, U; Sokaras, D; Alonso-Mori, R; Ignatyev, K; Egerton, VM; Manning, PL; Synchrotron imaging reveals bone healing and remodelling strategies in extinct and extant vertebrates, J. Royal Society Interface 11, 20140277 (2014).

139. Edwards, NP; Manning, PL; Bergmann, U; Larson, PL; van Dongen, BE; Sellers, WI; Webb, SM; Sokaras, D; Alonso-Mori, R; Ignatyev, K; Barden, HE; van Veelen, A; Anné, J; Egerton VM; Wogelius, RA; Leaf metallome preserved over 50 million years, Metallomics 6, 774-782 (2014).

138. Hattne, J; Echols, N; Tran, R; Kern, J; Gildea, RJ; Brewster, AS; Alonso-Mori, R; Glöckner, C; Hellmich, J; Laksmono, H; Sierra, RG; Lassalle-Kaiser, B; Lampe, A; Han, G; Gul, S; DiFiore, D; Milathianaki, D; Fry, AR; Miahnahri, A; White, WE; Schafer, DW; Seibert, MM; Koglin, JE; Sokaras, D; Weng, T-C; Sellberg, J; Latimer, MJ; Glatzel, P; Zwart, PH; Grosse-Kunstleve, RW; Bogan, MJ; Messerschmidt, M; Williams, GJ; Boutet, S; Messinger, J; Zouni, A; Yano, J; Bergmann, U; Yachandra, VK; Adams, PD; Sauter, NK; Accurate macromolecular structures using minimal measurements from X-ray free-electron lasers, Nature Methods 11, 545 (2014).

137. Mitzner, R; Rehanek; J; Kern, J; Gul, S; Hattne, J; Taketo Taguchi, T; Alonso-Mori, R; Tran, R; Weniger, C; Schröder, H; Quevedo, W; Laksmono, H; Sierra, RG; Han, G; Lassalle-Kaiser, B; Koroidov, S; Kubicek, K; Schreck, S; Kunnus, K; Brzhezinskaya, M; Firsov, A; Minitti, MP; Turner, JJ; Moeller, S; Sauter, NK; Bogan, MJ; Nordlund, D; Schlotter, WF; Messinger, J; Borovik, A; Techert, S; de Groot, FMF; Föhlisch, A; Erko, A; Bergmann, U; Yachandra, VK; Wernet, Ph; Yano, J; L‑Edge X‑ray Absorption Spectroscopy of Dilute Systems Relevant to Metalloproteins Using an X‑ray Free-Electron Laser, J. Phys Chem. (Letters) 4, 3641 (2013).

136. Lundberg, M; Kroll, Th; DeBeer, S; Bergmann, U; Wilson, SA; Glatzel, P; Nordlund, D; Hedman, B; Hodgson, KO; Solomon, EI; Metal − Ligand Covalency of Iron Complexes from High-Resolution Resonant Inelastic X‑ray Scattering, J. Am. Chem. Soc. 135, 17121 (2013).

135. Lassalle-Kaiser, B; Boron III, TT; Krewald, V; Kern, J; Beckwith, MA; Delgado-Jaime, MU; Schroeder, H; Alonso-Mori, R; Nordlund, D; Weng, T-S; Sokaras, D; Neese, F; Bergmann, U; Yachandra, VK; DeBeer, S; Pecoraro, VL; Yano J; Experimental and Computational X‑ray Emission Spectroscopy as a Direct Probe of Protonation States in Oxo-Bridged MnIV Dimers Relevant to Redox-Active Metalloproteins, Inorganic Chemistry 52, 6286–6298, (2013).

134. Chen, C; Huang, C; Waluyo, I; Nordlund, D; Weng, T-C; Sokaras, D; Weiss, T; Bergmann, U; Pettersson, LGM; Nilsson, A; Solvation structures of protons and hydroxide ions in water, J. Chem Phys. 138, 154506 (2013).

133. Manning, PL; Edwards, NP; Wogelius, RA, Bergmann, U; Barden HE; Peter L. Larson, PL; Schwarz-Wings, D; Egerton, VM; Sokaras, D; Alonso-Mori, R; Sellers, WI; Synchrotron-based chemical imaging reveals plumage patterns in a 150 million year old early bird, J. Anal. At. Spectrom. 28, 1024–1030 (2013).

132. Chandrasekaran P; Chiang, KP, Nordlund, D; Bergmann, U; Holland, PL DeBeer S; On the Sensitivity of X-ray Core Spectroscopy to Changes in Metal Ligation: A Systematic Study of High-Spin Ferrous Complexes, Inorganic Chemistry 52, 6286–6298, (2013).

131. Glatzel, P; Schroeder, H; Pushkar, Y; Boron, III, T; Mukherjee, S; Christou, G; Pecoraro, VL;⊥ Johannes Messinger, J; Yachandra, VK; Bergmann, U; JYano, J; Electronic Structural Changes of Mn in the Oxygen-Evolving Complex of Photosystem II during the Catalytic Cycle, Inorganic Chemistry 52, 5642-5644, (2013).

130. Sokaras, D; Weng, TC; Nordlund, D; Alonso-Mori, R; Velikov, P; Wenger, D; Garachtchenko, A; George, M; Borzenets, V; Johnson, B; Rabedeau, T; Bergmann, U; A seven-crystal Johann-type hard x-ray spectrometer at the Stanford Synchrotron Radiation Lightsource, Review of Scientific Instruments 84, 053102, (2013).

129. Lancaster, KM; Hu, Y; Bergmann, U; Ribbe, MW; DeBeer, S; Identification of an Interstitial Carbide in NifEN-bound FeMoco Precursor, J. Am. Chem. Soc. (communication) 135, 610−612, (2013).

128. Kern, J; Alonso-Mori, R; Tran, R; Hattne, J; Gildea, RJ; Echols, N; Glöckner, C; Hellmich, J; Laksmono, H; Sierra, RG; Lassalle-Kaiser, B; Koroidov, S; Lampe, A; Han, G; Sheraz, G; DiFiore, D; Milathianaki, D; Fry, AR; Miahnahri, A; Schafer, DW; Messerschmidt, MM; Seibert, MM; Koglin, E; Sokaras, D; Weng, TC; Sellberg, J; Latimer, MJ; Grosse-Kunstleve, RW; Zwart, White, WE; Glatzel, P; Adams, PD; Bogan, MJ; Williams, GJ; Boutet, S; Messinger, J; Zouni, A; Sauter, NK; Yachandra, VK; Bergmann, U; Yano, J; Simultaneous Femtosecond X-ray Spectroscopy and Diffraction of Photosystem II at Room Temperature, Science 340, 491-495 (2013).

127. Edwards, NP; Wogelius, RA; Bergmann, U; Larson, P; Sellers, WI; Manning, PL; Mapping prehistoric ghosts in the synchrotron, Appl. Phys. A, online edition, Dec 11, 2012

126. Alonso-Mori, R; Kern, J; Gildea, RJ; Sokaras, D; Weng, TC; Lassalle-Kaiser, B; Tran, R; Hattne, J; Laksmono, H; Hellmich, J; Glöckner, C; Echols, N; Sierra, RG; Schafer, DW; Sellberg, J; Kenney, C; Herbst, R; Pines, J; Hart, P; Herrmann, S; Grosse-Kunstleve, RW; Latimer, MJ; Fry, AR; Messerschmidt, MM; Miahnahri, A; Seibert, MM; Zwart, PH; White, WE; Adams, PD; Bogan, MJ; Boutet, S; Williams, GJ; Zouni, A; Messinger, J; Glatzel, P; Sauter, NK; Yachandra, VK; Yano, J; Bergmann, U; Energy-dispersive X-ray emission spectroscopy using an X-ray free-electron laser in a shot-by-shot mode, Proc Natl Acad Sci 109, 19103- 19107 (2012).

125. Sierra, RG; Laksmono, H; Kern, J; Tran, R; Hattne, J; Alonso-Mori, R; Lassalle-Kaiser, B; Glöckner, C; Hellmich, J; Schafer, DW; Echols, N; Gildea, RJ; Grosse-Kunstleve, RW; Sellberg, J; McQueen, TA; Fry, AR; Messerschmidt, MM; Miahnahri, A; Seibert, MM; Hampton, CY; Starodub, D; Loh, DN; Sokaras, D; Weng, TC; Zwart, PH; Glatzel, P; Milathianaki, D; White, WE; Adams, PD; Williams, GJ; Sebastien Boutet, S; Zouni, A; Messinger, J; Sauter, NK; Bergmann, U; Yano, J; Yachandra, VK; Bogan, MJ; Nanoflow Electrospinning Serial Femtosecond Crystallography, Acta Crystallographica D 68 1584-1587 (2012).

124. Alonso-Mori, R; Kern, J; Sokaras, D; Weng, TC; Nordlund, D; Tran, R; Montanez, P; Delor, J; Yachandra, VK; Yano, J; Bergmann, U; A multi-crystal wavelength dispersive x-ray spectrometer, Review of Scientific Instruments 83, 073114-073122 (2012).

123. Kern, J; Alonso-Mori, R; Hellmich, J; Tran, R; Hattne, J; Laksmono, H; Glöckner, C; Echols, N; Sierra, RG; Sellberg, J; Lassalle-Kaiser, B; Gildea, RJ; Glatzel, P; Grosse-Kunstleve, RW; Latimer, MJ; McQueen, TA; DiFiore, D; Fry, AR; Messerschmidt, MM; Miahnahri, A; Schafer, DW; Seibert, MM; Sokaras, D; Weng, TC; Zwart, PH; White, WE; Adams, PD; Bogan, MJ; Boutet, S; Williams, GJ; Messinger, J; Sauter, NK; Zouni, A; Bergmann, U; Yano, J; Yachandra, VK; Room temperature femtosecond X-ray diffraction of photosystem II microcrystals, Proc Natl Acad Sci 109, 9721-9729, (2012).

122. Sokaras, D; Nordlund, D; Weng, TC; Alonso-Mori, R; Velikov, P; Wenger, D; Garachtchenko, A; George, M; Borzenets, V; Johnson, B; Qian, Q; Rabedeau, T; Bergmann, U; A high resolution and large solid angle x-ray Raman spectroscopy end-station at the Stanford Synchrotron Radiation Lightsource, Review of Scientific Instruments 83, 043112-043120 (2012).

121. Bergmann, U; Manning, PL; Wogelius, RA; Chemical mapping of paleontological and archeological artifacts with synchrotron X-rays, Annual Review of Analytical Chemistry 5, 361-389 (2012).

120. Lancaster, KM; Roemelt, M; Ettenhuber, P; Hu, Y; Ribbe, MW; Neese, F; Bergmann, U; DeBeer, S; X-Ray Emission Spectroscopy Evidences a Central Carbon in the Nitrogenase Iron-Molybdenum Cofactor, Science 334, 974-977 (2011).

119. Delgado-Jaime, MU; Dible, BR; Chiang, KP; Brennessel, WW; Holland, PL; Bergmann, U; DeBeer, S; Identifiaction of Light Atoms within Multinuclear Metal Cluster using Valence-to-Core X-Ray Emission Spectroscopy, Inorg. Chem. 50, 10709-17 (2011).

118. O. Haas, O; Ludwig, Chr; Bergmann, U; Singh, RN; Braun, A;T. Graule T; XAS Investigation of La1-xCaxCoO3−δ in comparison with La1-xSrxCoO3−δ and La1-xSrxFeO3−δ, Journal of Solid State Chemistry 184, 3163-3171(2011).

117. Bergmann U., Chapter 6, Imaging with X-ray Fluorescence in ‘The Archimedes Palimpsest’, Vol. 1 Netz R, Noel W, Wilson N, Tchernetska N, eds., Cambridge University Press, (2011).

116. Bergmann U; Synchrotron Rapid-Scan X-ray Fluorescence Imaging of Ancient Documents, Societas Scientiarum Fennica, Comment. Hum. Litt., 129/Eikonopoiia, (2011).

115. Huang, C; Wikfeldt, KT; Bergmann, U; Nordlund, D; McQueen, T; Sellberg, J; Pettersson, LGM; Nilsson, A; Wide-angle X-ray diffraction and molecular dynamics study of medium-range order in ambient and hot water, Phys Chem Chem Phys 13, 19997-20007 (2011).

114. Huang N; Nordlund, D; Huang, C; Bergmann, U; Weiss, TM; Pettersson, LGM; Nilsson, A; The X-ray Raman Scattering provides evidence for interfacial acetonitrile-water dipole interactions in aqueous Solution, J Chem Phys 135, 164509 (2011).

113. Wogelius, RA; Manning, PL; Barden, HE; Edwards, NP; Webb, SM; Sellers, WI; Taylor, KG; Larson, PL; Dodson, P; You, H; Da-qing, L; Bergmann, U; Trace metals as biomarkers for Eumelanin Pigment in the Fossil Record, Science 333, 1622-1626 (2011).

112. Beckwith, MA; Roemelt, M; Collomb, M-N; BuBoc, C; Weng T-C; Bergmann, U; Glatzel, P; Neese, F; DeBeer, S; Manganese Kβ X-ray Emission Spectroscopy as a Probe of Metal-Ligand Interactions, Inorg Chem 50, 8397-8409 (2011).

111. Edwards, NP; Barden, HE; van Dongen, BE; Manning, PL; Bergmann, U; Sellers, WI; Wogelius, RA; Infra-Red Mapping Resolves Soft-Tissue Preservation in 50 Million Year Old Reptile Skin, Proceedings of the Royal Society B 278, 3209-3218 (2011).

110. Waluyo, I; Huang, C; Nordlund, D; Bergmann, U; Weiss, TM; Pettersson, LGM; Nilsson, A; The structure of water in the hydration shell of cations from x-ray Raman and small angle x-ray scattering measurements, J. Chem. Phys. 134, 064513 (2011).

109. Friebel, D; Miller, DJ; O’Grady, CP; Anniyev, T; Bargar, J; Bergmann, U; Ogasawara, H; Wikfeldt, KT; Pettersson, LGM; Nilsson, A; In situ X-ray probing reveals fingerprints of surface platinum oxide, Phys. Chem. Chem. Phys. 13, 262-266 (2011).

108. Anniyev, T; Ogasawara, H; Ljungberg, MP; Wikfeldt, KT; MacNaughton, JB; Naslund, LA; Bergmann, U; Koh, S; Strasser, P; Pettersson, LGM; Nilsson, A; Complementarity between high-energy photoelectron and L-edge spectroscopy for probing the electronic structure of 5d transition metal catalysts, Phys. Chem Chem. Phys. 12, 5694-5700 (2010).

107. Huang, C; Wikfeldt, KT; Tokushima, T; Nordlund, D; Harada, Y; Bergmann, U; Niebuhr, M; Weiss, TM; Horikawa, Y; Leetmaa, M; Ljungberg, MP; Takahashi, O; Lenz, A; Ojamäe, L; Lyubartsev, AP; Shin S; Pettersson, LGM; Nilsson, A; Reply to Soper et al.: Fluctuations in water around a bimodal distribution of local hydrogen-bonded structural motifs, Proc Natl Acad Sci 107, E45 (2010)

106. Sadeghi, B; Bergmann, U; The Codex of a Companion of the Prophet and the Qur’ān of the Prophet, Arabica 57/4-5, 343-436, (2010).

105. Lee, N; Petrenko, T; Bergmann, U; Neese, F; DeBeer S; Probing Valence Orbital Composition with Iron K X-ray Emission Spectroscopy, J. Am. Chem. Soc. 132, 9715–9727 (2010).

104. Bergmann, U; Morton, RW; Manning, PL; Sellers, WI; Farrar, S; Huntley, KG; Wogelius, RA; Larson, P; Archaeopteryx feathers and bone chemistry fully revealed via synchrotron imaging, Proc Natl Acad Sci 107, (20) 9060-9065 (2010).

103. Nilsson, A; D. Nordlund, D; Waluyo, I; Huang, N; Ogasawara, H; Kaya, S; Bergmann, U; Näslund, L-Å; Öström, H; Wernet, Ph; Andersson, KJ; Schiros, T; Pettersson, LGM; X-ray absorption spectroscopy and X- ray Raman scattering of water and ice; an experimental view, Journal of Electron Spectroscopy and Related Phenomena 177, 99–129 (2010).

102. Meyer, DA; Zhang, X; Bergmann, U; Gaffney, KJ; Characterization of charge transfer excitations in hexacyanomanganate (III) with Mn K-edge resonant inelastic x-ray scattering J. Chem. Phys. 132, 134502, (2010).

102. Anniyev, T; Ogasawara, H; Ljungberg, MP; Wikfeldt, KT; MacNaughton, JB; Näslund, L-A; Bergmann, U; Koh, S; Strasser, P; Pettersson, LGM; Nilsson, A; Complementarity between high-energy photoelectron and L-edge spectroscopy for probing the electronic structure of 5d transition metal catalysts, Phys. Chem. Chem. Phys. 12, 5694–5700 (2010).

100. Pushkar, Y; Long, X; Glatzel, P; Brudvig, GW; Dismukes, GC; Collins, TJ; Yachandra, VK; Yano, J; Bergmann, U; Direct Detection of Oxygen Ligation to the Mn4Ca Cluster of Photosystem II by X-ray Emission Spectroscopy, Angew Chem Int Ed. 49, 800-803 (2010).

99. Larson, NL; Morton, RW; Larson, PL; Bergmann, U; A new look at fossil cephalopods,Tanabe, K., Shigeta, Y., Sasaki, T. & Hirano, H. (eds.) Cephalopods -Present and Past Tokai University Press, Tokyo, p. 303-314 (2010).

98. Bergmann, U; Glatzel, P; X-Ray Emission Spectroscopy, Photosynthesis Research, 101, 77-88 (2009)

97. Huang, C; Wikfeldt, KT; Tokushima, T; Nordlund, D; Harada, Y; Bergmann, U; Niebuhr, M; Weiss, TM; Horikawa, Y; Leetmaa, M; Ljungberg, MP; Takahashi, O; Lenz, A; Ojamäe, L; Lyubartsev, AP; Shin S; Pettersson, LGM; Nilsson, A; The Inhomogeneous Structure of Water at Ambient Conditions, Proc Natl Acad Sci, 106, 15214-15218 (2009)

96. Smolentsev, G; Soldatov, AV; Messinger, J; Merz, K; Weyhermüller, T; Bergmann, U; Pushkar, Y; Junko Yano, J; Yachandra, VK; Glatzel, P; X-ray Emission Spectroscopy To Study Ligand Valence Orbitals in Mn Coordination Complexes, J. Am. Chem. Soc., 131, 12451–12457 (2009).

95. Waluyo, I; Nordlund, D; Bergmann, U; Pettersson, LGM; Nilsson, A; Increased Fraction of Weakened Hydrogen Bonds of Water in AOT Reverse Micelles, J. Chem Phys., 131, 031103 (2009).

94. Glatzel, P; de Groot, FMF; Bergmann, U; Hard X-ray Photon-In Photon-Out Spectroscopy, SYNCHROTRON RADIATION NEWS, Vol. 22, No. 2, (2009).

93. Bergmann, U; Knox, K; Pseudo-color enhanced x-ray fluorescence imaging of the Archimedes Palimpsest,Document Recognition and Retrieval XVI, edited by Kathrin Berkner, Laurence Likforman-Sulem, Proc. of SPIE-IS&T Electronic Imaging, SPIE Vol. 7247, 724702-1-13 (2009).

92. Popescu, BFG; Martin J. George, MJ; Bergmann, U; Garachtchenko, AV; Kelly, ME; McCrea, RPE; Lüning, K; Devon, RM; George, GN; Hanson, AD; Harder, SM; Chapman, LD; Pickering, IJ; Nichol, H; Mapping metals in Parkinson's and normal brain using rapid-scanning X-ray fluorescence, Phys. Med. Biol., 54, 651–663 (2009).

91. Yano, J; Kern, J; Pushkar, Y; Sauer, K; Glatzel, P; Bergmann, U; Messinger, J; Zouni, A; Yachandra, VK; High-Resolution Structure of the Photosynthetic Mn4Ca Catalyst from X-ray Spectroscopy, Phil. Trans. R. Soc. London B., 363, 1139-1147 (2008).

90e. Bergmann, U; Di Cicco, A; Wernet, Ph; Principi, E; Glatzel, P; Nilsson, A; Erratum-Nearest Neighbor Oxygen Distances in Liquid Water and Ice Observed by X-ray Raman based EXAFS, J. Chem. Phys., 128, 089902 (2008).

90. Bergmann, U; Di Cicco, A; Wernet, Ph; Principi, E; Glatzel, P; Nilsson, A; Nearest Neighbor Oxygen Distances in Liquid Water and Ice Observed by X-ray Raman based EXAFS, J. Chem. Phys., 127, 174504 (2007).

89. Bergmann, U; Archimedes brought to light, Physics World, 20, No 11, pages 39-42, (November 2007).

88. Bergmann, U; Nordlund, D; Wernet, Ph; Odelius, M; Pettersson, LGM; Nilsson, A; Isotope Effects in Liquid Water probed by X-ray Raman Spectroscopy,Phys. Rev. B, 76, 024202 (2007).

87. Deb, A; Bergmann, U; Cramer, SP; Elton J. Cairns EJ; In Situ X-Ray Absorption Spectroscopic Study of Li1.05Ni0.35Co0.25Mn0.4O2 Cathode Material Coated with LiCoO2, Journal of The Electrochemical Society, 154 (6) A534-A541 (2007).

86. Pushkar, Y; Yano, J; Glatzel, P; Messinger, J; Lewis, A; Sauer, K; Bergmann, U; Yachandra, VK; Structure and Orientation of the Mn4Ca Cluster in Photosystem II Membranes Determined by Polarized Range-Extended X-ray Absorption Spectroscopy, J. Biological Chemistry, 282, 7198- 7208, (2007).

85. Pushkar, Y; Yano, J; Glatzel, P; Messinger, J; Lewis, A; Sauer, K; Bergmann, U; Yachandra, VK; Polarized Range-Extended X-Ray Absorption Spectroscopy of Oriented Photosystem II Membranes in the S1 State, AIP Conference Proceedings --February 2, 2007 --X-RAY ABSORPTION FINE STRUCTURE -XAFS13: 13th International Conference, 882, 346-348, (2007).

84. Yano, J; Pushkar, Y; Messinger, J; Bergmann, U; Glatzel, P; Yachandra, VK; Electronic Structure of the Mn4Ca Cluster in the Oxygen-Evolving Complex of Photosystem II Studied by Resonant Inelastic X-Ray Scattering, AIP Conference Proceedings --February 2, 2007 --X-RAY ABSORPTION FINE STRUCTURE - XAFS13: 13th International Conference, 882, 316-318, (2007).

83. Bergmann, U; Mullins, OC; Carbon X-Ray Raman Spectroscopy of PAH’s and Asphaltenes, Chapter 5 in Asphaltene, Heavy Oils and Petroleomics,Edited by OLIVER C. MULLINS, ERIC Y. SHEU, AHMED HAMMAMI and ALAN G. MARSHALL, Springer Pub Co., New York, 2006.

82. Deb, A; Bergmann, U; Cramer, SP; Cairns, EJ; Local structure of LiNi0.5Mn0.5O2 cathode material probed by in situ x-ray absorption spectroscopy,J. Appl. Phys., 99, 063701, (2006).

81. Deb, A; Ralph, JM; Cairns, EJ; Bergmann, U; Characterization of La0.8Sr0.2FeO3− and La0.7Sr0.2FeO3−  as a function of temperature by x-ray absorption spectroscopy,Phys. Rev. B, 73, 115114, (2006).

80. Bergmann, U; X-Ray Fluorescence Imaging of the Archimedes Palimpsest: A Technical Summary (2005) https://www.slac.stanford.edu/gen/com/images/technical%20summary_final.pdf

79. de Groot, FMF; Glatzel, P; Bergmann, U; van Aken, PA; Barrea, RA; Klemme, S; Havecker, M; Knop-Gericke, A; Heijboer, WM; Weckhuysen, BM; 1s2p resonant inelastic X-ray scattering of iron oxides, Journal of Physical Chemistry B, 109, 20751-20762, (2005).

78. Glatzel, P; Yano, J; Bergmann, U; Visser H; Robblee, JH; Gu W; de Groot, FMF; Cramer, SP; Yachandra, VK; Resonant inelastic X-ray scattering (RIXS) spectroscopy at the Mn K absorption pre- edge -a direct probe of the 3d orbitals,J. Phys. and Chem. of Solids, 66, 2163–2167, (2005).

77. Yano, J; Pushkar, Y; Glatzel, P; Lewis, A; Sauer, K; Messinger, J; Bergmann, U; Yachandra, VK; High-Resolution Mn EXAFS of the Oxygen-Evolving Complex in Photosystem II: Structural Implications for the Mn4Ca Cluster, J. Am. Chem. Soc. (communications), 127, 14974-14975 (2005).

76. Wernet, Ph; Testemale, D; Hazemann, J-L; Argoud, R; Glatzel, P; Pettersson, LGM; Nilsson, A; Bergmann, U; Spectroscopic characterization of microscopic hydrogen bonding disparities in supercritical water, Journal of Chemical Physics, 123, 15403, (2005).

75. Reynolds, KW; Bergmann, U; TESTING OF HIGH-RESOLUTION SI AND GE ANALYZERS FOR X-RAY RAMAN SCATTERING AND X-RAY EMISSION SPECTROSCOPY, US Department of Energy, Journal of Undergraduate Research, Vol 5, (2005).

74. Yano, J; Kern, J; Irrgang, K-D; Latimer, MJ; Bergmann, U; Glatzel, P; Pushkar, Y; Biesiadka, J; Loll, B; Sauer, K; Messinger, J; Zouni, A; Yachandra, VK; X-ray Damage to the Mn4Ca Complex in Single-Crystals of Photosystem II: A Case Study for Metallo-Protein Crystallography, Proc Natl Acad Sci, 102, 12047-12052 (2005).

73. Deb, A; Bergmann, U; Cramer, SP; Cairns, EJ; Structural Investigations of LiFePO4 electrodes and in-situ Studies by Fe X-ray Absorption Spectroscopy, Electrochemica Acta, 50, 5200-5207, (2005).

72. Näslund, L-Å; Lüning, J; Ufuktepe, Y; Ogasawara, H; Wernet, Ph; Bergmann, U; Pettersson, LGM; Nilsson, A; X-ray Absorption Spectroscopy Measurements of Liquid Water, Journal of Physical Chemistry B, 109, 13835-13839, (2005).

71. Näslund, L-Å; Edwards, DC; Wernet, Ph; Bergmann, U; Ogasawara, H; Pettersson, LGM; Myneni, S; Nilsson, A; X-ray absorption spectroscopy study of the hydrogen bond network in the bulk water of aqueous solutions, Journal of Physical Chemistry A, 109, 5995-6002, (2005).

70. Glatzel, P; de Groot, FMF; Manoilova, O; Grandjean, D; Weckhuysen, BM; Bergmann, U; Barrea, R; Range-extended EXAFS at the L-edge of rare earths using high energy resolution fluorescence detection: A study of La in LaOCl, Physical Review B, 72, 014117 (2005).

69. Deb, A; Bergmann, U; Cramer, SP; Cairns, EJ; In situ X-ray Absorption Spectroscopic Study of the Li[Ni1/3Co1/3Mn1/3]O2 Cathode Material, Journal of Applied Physics, 97, 113523, (2005).

68. Nilsson, A; Wernet, Ph; Nordlund, D; Bergmann, U; Cavalleri, M; Odelius, M; Ogasawara, H; Näslund, L-Å; Hirsch, TK; Ojamäe, L; P. Glatzel, P; Pettersson, LGM; Comment on "Energetics of Hydrogen Bond Network Rearrangements in Liquid Water" Science, 308, Issue 5723, 793 (2005).

67. Doonan, CJ; Zhang, L; Young, CG; George, SJ; Deb, A; Bergmann, U; George, GN; Cramer, SP; High- Resolution X-ray Emission Spectroscopy of Molybdenum Compounds, Inorg. Chem. (Communication), 44, 2579-2581, (2005).

66. Glatzel, P; Bergmann, U; High resolution 1s core hole x-ray spectroscopy in 3d transition metal complexes – Electronic and Structural Information, Coordination Chemistry Reviews, 249, 65-95, (2005).

65. Bargar, JR; Bergmann, U; Tebo, BM; Webb, SM; Villalobos, M; Chiu, V; Biotic and Abioic Products of Mn(II) Oxidation by Spores of the Marine Bacillus sp., strain SG-1, American Minerologist, 90, 143-154, (2005).

64. Glatzel, P; Bergmann, U; de Groot FMF; Cramer SP, A study of transition metal K absorption pre-edges by resonant inelastic X-ray scattering (RIXS), Physica Scripta XAFS12 Topical Issue, T115, 1032 (2005).

63. Deb, A; Bergmann, U; Cairns, EJ; Cramer, SP; X-ray absorption spectroscopy study of the LixFePO4 cathode during cycling using a novel electrochemical in-situ reaction cell, Journal of Synchrotron Radiation, 11, 497-504, (2004).

62. Pizarro, SA; Glatzel, P; Visser, H; Robblee, JH; Christou, G; Bergmann, U; Yachandra, VK; Examination of the Mn oxidation state in model compounds structurally relevant to Photosystem II using Mn K-edge X- ray absorption and Kβ X-ray emission spectroscopy,Phys. Chem. Chem. Phys., 6, 4864 – 4870, (2004).

61. Glatzel, P; Bergmann, U; Yano, J; Visser, H; Robblee, J; Gu, W; de Groot, FMF; Cramer, SP; Yachandra, VK; The Electronic Structure of Mn in Oxides, Coordination Complexes and in the Oxygen-Evolving Complex of Photosystem II Studied by Resonant Inelastic X-Ray Scattering (RIXS), J. Am. Chem. Soc., 126, 9946-9959, (2004).

60. Heijboer, WM; Pieter Glatzel, P; Sawant, KR; Lobo, RF; Bergmann, U; Barrea, RA; Koningsberger, DC; Weckhuysen BM; de Groot, FMF; Kβ-detected XANES of Framework -Substituted FeZSM-5 Zeolites, J. Phys. Chem. B, 108, 10002-10011, (2004).

59. Bergmann, U; Groenzin, H.; Mullins, OC; Glatzel, P; John Fetzer, J; Cramer SP; X-ray Raman spectroscopy -A new tool to study local structure of aromatic hydrocarbons and asphaltenes, Petroleum Science and Technology, 22, 863-875, (2004).

58. Deb, A; Bergmann, U; Cairns, EJ; Cramer, SP; Structural Investigations of LiFePO4 Electrodes by Fe X- ray Absorption Spectroscopy,J. Phys. Chem. B, 108, 7046-7051, (2004).

57. Wernet, Ph; Nordlund, D; Bergmann, U; Ogasawara, H; Cavalleri, M; Näslund, LÅ; Hirsch, TK; Ojamäe, L; Glatzel, P; Odelius, M; Pettersson, LGM; Nilsson, A; The Structure of the First Coordination Shell in Liquid Water, Science, 304, 995 (2004).

56. Glatzel, P; Bergmann, U; de Groot FMF; Cramer SP; Multiple excitations in the K fluorescence emission of Mn, Fe and Ni compounds, CP652, X-Ray and Inner-Shell Processes: 19th International Conference on X-ray and Inner-Shell Processes edited by A. Bianconi, A. Marcelli, and N. L. Saini, American Institute of Physics 0- 7354-0111-X/03 (2003).

55. Gordon, ML; Tulumello, D; Cooper, G; Hitchcock, AP; Glatzel, P; Mullins, OC; Cramer, SP; Bergmann, U; Inner-shell excitation spectroscopy of fused ring aromatic molecules by electron energy loss and X-ray Raman techniques, J. Phys. Chem. A, 107, 8512-8520, (2003).

54. Bergmann, U; Sturhahn, W; Linn, Jr., DE; Jenney, Jr., FE; Adams, MWW; Rupnik, K; Hales, BJ; Alp, EE; Mayse, A; Cramer, SP; Observation of Fe-H/D Modes by Nuclear Resonant Vibrational Spectroscopy, J. Am. Chem. Soc. (Communication), 125, 4016-17 (2003).

53. Bergmann, U; Ivanovic, M; Glatzel, P; Cramer, SP; High-Resolution X-ray Imaging Based on Curved Bragg Mirrors: First Result. IEEE, Transactions on Nuclear Science, 50, 140-145 (2003).

52. Braun, A; Wang, H; Bergmann, U; Tucker, MC; Gu, W; Cramer, SP; Cairns, EJ; Origin of chemical shift of manganese in lithium battery electrode materials-a comparison of hard and soft x-ray techniques. Journal of Power Sources, 112, 231-235 (2003).

51. Bergmann, U; Groenzin, H; Mullins, OC; Glatzel, P; Fetzer, J; Cramer, SP; Carbon K-edge x-ray Raman spectroscopy supports simple yet powerful description of aromatic hydrocarbons and asphaltenes. Chem. Phys. Lett., 369, 184-191 (2003).

50. Bergmann, U; Wernet, Ph; Glatzel, P; Cavalleri, M; Pettersson, LGM; Nilsson, A; Cramer; SP; X-ray Raman Spectroscopy at the Oxygen K-edge of Water and Ice: Implications on Local Structure Models. Phys. Rev. B, 66, 092107 (2002).

49. Glatzel, P; Bergmann, U; Gu W; Wang, H; Stepanov, S; Mandimutsira, BS; Riordan, CG; Horwitz, CP; Collins, TJ; Cramer, SP; Electronic Structure of Ni Complexes by X-ray Resonance Raman Spectroscopy (Resonant Inelastic X-ray Scattering). J. Am. Chem. Soc.; (Communication); 124, 9668-9669 (2002)

48. Bergmann, U; Ivanovic, M; Glatzel, P; Cramer, SP; (Edited by: Seibert, J.A. High-Resolution X-ray Imaging Using Rowland-Circle Bragg Optics. 2001 IEEE Nuclear Science Symposium Conference Record (Cat. No.01CH37310), (vol.3), San Diego, CA, USA, 4-10 Nov. 2001. Piscataway, NJ USA: IEEE, p.1481-3 vol.3. 4 vol. l+2518 pp. (2002)

47. Bergmann, U; Glatzel, P; Cramer, SP; Bulk Sensitive XAS Characterization of Light Elements: From X-ray Raman Scattering to X-ray Raman Spectroscopy. Microchem. J., 71, 221-230, (2002).

46. Messinger, J; Robblee, JH; Bergmann, U; Fernandez, C; Glatzel, P; Isgandrova, S; Hanssum, B; Renger, G; Cramer, SP; Sauer, K; Yachandra, VK; Manganese oxidation states in photosystem II. PS2001 Proceedings, 12th International Congress on Photosynthesis, Brisbane, Australia. CSIRO Publishing, Collingwood, Australia, (2002).

45. Glatzel, P; Jacquamet, L; Bergmann, U; de Groot, FMF; Cramer SP; Site-Selective EXAFS in Mixed-Valent Compounds Using High Resolution Fluorescence Detection --A Study of Fe in Prussian Blue. Inorganic Chemistry, 41, 3121-3127, (2002).

44. Bergmann, U; Bendix, J; Glatzel, P; Gray, HB; Cramer SP; Anisotropic Valence → Core X-ray Fluorescence from a [Rh(en)3][Mn(N)(CN)5].H2O Single Crystal – Experimental Results and Density Functional Calculations. J. Chem. Phys., 116, 2011-2015, (2002).

43. Glatzel, P; Bergmann, U; de Groot, FMF; Cramer, SP; Influence of the core hole on the Kβ emission following photoionization or orbital electron capture -A comparison using MnO and 55Fe2O3. Phys. Rev. B, 64, 045109, U111-U119 (2001).

42. Messinger, J ; Robblee, JH; Bergmann, U; Fernandez, C; Glatzel, P; Visser, H; Cinco, RM; McFarlane KL; Bellacchio E; Pizarro SA; Cramer, SP; Sauer, K; Yachandra, VK; Klein, MP; Absence of Mn-centered Oxidation in the S2 -S3 Transtion: Implications for the Mechanism of Photosynthetic Water Oxidation. J. Am. Chem. Soc., 123, 7804-7820 (2001).

41. Visser, H; Anxolabhre-Mallart, E; Bergmann, U; Glatzel, P; Robblee, J; Cramer, SP; Girerd, JJ; Sauer, K; Klein, MP; Yachandra, VK; Mn K-Edge XANES and Kβ XES Studies of two Mn-Oxo Binuclear Complexes. Investigation of Three Different Oxidation States Relevance to the Oxygen Evolving Center of PS II. J. Am. Chem. Soc., 123, 7031-7039 (2001).

40. Bergmann, U; Glatzel, P; Robblee, JH; Messinger, J; Fernandez, C; Cinco, R; Visser, H; McFarlane, K; Bellacchio, E; Pizarro, S; Sauer, K; Yachandra, VK; Klein, MP; Cox, BL; Nealson, KH; Cramer, SP; High resolution x-ray spectroscopy of rare events: A different look at local structure and chemistry. Journal of Synchrotron Radiation, 8, 199-203 (2001).

39. Bergmann, U; Frahm, R; X-ray absorption spectroscopy. TDR XFEL workshop series "Methods and Instrumentation for the XFEL", J. Hastings and Th. Tschentscher, eds, p. 52-59 (2001).

38. Horne, CR; Bergmann, U; Grush, MM; Perera, RCC, Ederer, DL; Callcott, TA; Cairns, EJ; Cramer, SP; Electronic Structure of Chemically-Prepared LixMn2O4 Determined by Mn X-ray Absorption and Emission Spectroscopies. . J. Phys. Chem. B, 104, 9587-9596 (2000).

37. Bergmann, U; Mullins, OC; Cramer, SP; X-ray Raman Spectroscopy of Carbon in Asphaltene: Light Element Characterization with Bulk Sensitivity. Analytical Chemistry, 72, 2609-2612 (2000).

36. Horne, CR; Bergmann, U; Grush, MM; Kim, J; Manthiram, A; Cramer, SP; Striebel, KA; Cairns, EJ; Structural Studies of Lithium Insertion in Lithium Manganese Oxides. Intercalation Compounds for Battery Materials, G. A. Nazri, T. Ohzuku, and M, Thackeray, eds. Honolulu, Hawaii, Fall 1999. The Electrochemical Society. PV 99-24, Electrochem. Soc., Pennington, NJ, p. 41 (2000).

35. Horne, CR; Richardson, TJ; Gee, B; Tucker, M; Grush, MM; Bergmann, U; Striebel, KA; Cramer, SP; Reimer, JA; Cairns, EJ; Composition-Structure-Property-Performance Relationship in Mn- substituted LiMn2O4. Intercalation Compounds for Battery Materials, G. A. Nazri, T. Ohzuku, and M, Thackeray, eds. Honolulu, Hawaii, Fall 1999. The Electrochemical Society. PV 99-24, Electrochem. Soc., Pennington, NJ, p. 112 (2000).

34. Bergmann, U; Glatzel, P; Cramer, SP; High Resolution X-ray Fluorescence Spectroscopy at X-25. National Synchrotron Light Source, Newsletter, 1-3, March 2000.

33. Horne, CR; Bergmann, U; Kim, J; Striebel, KA; Manthiram, A; Cramer, SP; Cairns, EJ; Structural Investigations of Li1.5+xNa0.5MnO2.85I0.12 Electrodes by Mn X-Ray Absorption Near Edge Spectroscopy. J. Electrochem. Soc., 147, 395-398 (2000).

32. Siddons, DP; Bergmann, U; Hastings, JB; Polarization Effects in Resonant Nuclear Scattering. Hyperfine Interactions, 123, 681-719 (1999).

31. Bergmann, U; Glatzel, P; deGroot, FM; Cramer, SP; High Resolution K Capture X-ray Fluorescence Spectroscopy: A New Tool for Chemical Characterization. J. Am. Chem. Soc. (Communication), 121, 4926- 4927 (1999).

30. Bergmann, U; Horne, CR; Collins, TJ; Workman, JM; Cramer SP; Chemical Dependence of Interatomic X- Ray Transition Energies and Intensities -A Study of Mn Kβ'' and Kβ2,5 Spectra. Chem. Phys. Lett., 302, 119-124 (1999).

29. Messinger, J ; Robblee, JH; Fernandez, C; Cinco, RM; Visser, H; Bergmann, U; Glatzel, P; Cramer, SP; Campbell, KA; Peloquin, JM; Britt, RD; Sauer, K; Yachandra, VK; Klein, MP; Oxidation States and Structure of the Manganese Cluster in the S0 State of the Oxygen Evolving Complex. pulished in 'Photosynthesis: Mechanisms and Effects' , (Garab, G. Editor), : Kluwer Academic Publishers, 1279-1282 (1998).

28. Cinco, RM; Fernandez, C; Messinger J ; Robblee, JH; Visser, H; McFarlane, KL; Bergmann, U; Glatzel, P; Cramer, SP; Sauer, K; Yachandra, VK; Klein, MP; Refined Model of the Oxidation States and Structures of the Mn/Ca/Cl Cluster of the Oxygen Evolving Complex of Photosystem II. pulished in 'Photosynthesis: Mechanisms and Effects' , (Garab, G. Editor), : Kluwer Academic Publishers, 1273-1278 (1998).

27. Bergmann, U; Grush, MM; Horne, CR; DeMarois, P; PennerHahn, JE; Yocum, CF; Wright, DW; Dube, CE; Armstrong, WH; Christou, G; Eppley, HJ; Cramer, SP; Characterization of the Mn Oxidation States in Photosystem II by Kβ X-ray Fluorescence Spectroscopy. J. Phys. Chem. B, 102, 8350- 8352 (1998).

26. Bergmann, U; Cramer, SP; A High-Resolution Large-Acceptance Analyzer for X-ray Fluorescence and Raman Spectroscopy. SPIE Proc., 3448, 198-209 (1998).

25. Sinn, H; Sette, F; Bergmann, U; Halcoussis, C; Krisch, M; Verbeni, R; Burkel, E; Coherent Dynamic Structure Factor of Liquid Lithium by Inelastic X-ray Scattering. Phys. Rev. Lett., 78, 1715-1718 (1997).

24. Sette, F; Ruocco, G; Krisch, M; Masciovecchio, C; Verbeni, R; Bergmann, U; Transition from Normal to Fast Sound in Liquid Water -Reply. Phys. Rev. Lett., 78, 976-976 (1997).

23. Ruocco, G; Sette, F; Krisch, M; Bergmann, U; Masciovecchio, C; Verbeni, R; Line Broadening in the Collective Dynamics of Liquid and Solid Water. Phys. Rev. B, 54, 14892-14895 (1996).

22. Krisch, MH; Sette, F; Bergmann, U; Masciovecchio, C; Verbeni, R; Goulon, J; Caliebe, W; Kao, CC; Observation of Magnetic Circular Dichroism in Resonant Inelastic X-ray Scattering at the L(3) Edge of Gadolinium Metal. Phys. Rev. B, 54, 12673-12676 (1996).

21. Masciovecchio, C; Bergmann, U; Krisch, M; Ruocco, G; Sette, F; Verbeni, R; A Perfect Crystal X-ray Analyser with 1.5 meV Energy Resolution. Nucl. Instrum. Methods B, 117, 339-340 (1996).

20. Sette, F; Ruocco, G; Krisch, M; Masciovecchio, C; Verbeni, R; Bergmann, U; Transition from Normal to Fast Sound in Liquid Water. Phys. Rev. Lett., 77, 83-86 (1996).

19. Sette, F; Ruocco, G; Krisch, M; Bergmann, U; Masciovecchio, C; Mazzacurati, V; Signorelli, G; Verbeni, R; Collective Dynamics in Water by High Energy Resolution Inelastic X-ray Scattering -Reply. Phys. Rev. Lett., 76, 3656-3657 (1996).

18. Masciovecchio, C; Bergmann, U; Krisch, M; Ruocco, G; Sette, F. Verbeni, R; A Perfect Crystal X-ray Analyser with meV Energy Resolution. Nucl. Instrum. Methods B, 111, 181-186 (1996).

17. Masciovecchio, C; Ruocco, G; Sette, F; Krisch, M; Verbeni, R; Bergmann, U; Soltwisch, M; Observation of Large Momentum Phononlike Modes in Glasses. Phys. Rev. Lett., 76, 3356-3359 (1996).

16. Verbeni, R; Sette, F; Krisch, MH; Bergmann, U; Gorges, B; Halcoussis, C; Martel, K; Masciovecchio, C; Ribois, JF; Ruocco, G; Sinn H; X-ray Monochromator with 2*10-8 Energy Resolution. J. Synchrotron Radiation, 3, 62-64 (1996).

15. Ruocco, G; Sette, F; Bergmann, U; Krisch, M; Masciovecchio, C; Mazzacurati, V; Signorelli, G; Verbeni, R; Equivalence of the Sound Velocity in Water and Ice at Mesoscopic Wavelengths. Nature, 379, 521-523 (1996).

14. Siddons, DP; Hastings, JB; Bergmann, U; Sette, F; Krisch, M; Mössbauer Spectroscopy using Synchrotron Radiation -Overcoming Detector Limitations. Nucl. Instrum. Methods B, 103, 371-375 (1995).

13. Sette, F; Ruocco, G; Krisch, M; Bergmann, U; Masciovecchio, C; Mazzacurati, V; Signorelli, G; Verbeni, R; Collective Dynamics in Water by High Energy Resolution Inelastic X-ray Scattering. Phys. Rev. Lett., 75, 850-853 (1995).

12. Bergmann, U; Mössbauer Spectroscopy with Synchrotron Radiation. Appl. Radiation and Isotopes, 46, 525- 530 (1995).

11. Bergmann, U; Siddons, DP; Hastings, JB; Suppression of Charge Scattering in Mössbauer Experiments using Synchrotron Radiation. Resonant Anomalous X-ray Scattering. Theory and Application. Edited by Materlik, G; Sparks, CJ; Fischer, K; North Holland, (1994).

10. Bergmann, U; Siddons, DP; Hastings, JB; Time-Dependent Polarization in Mössbauer Experiments with Synchrotron Radiation II. Hyperfine Interactions, 92, 1113-1121 (1994).

9. Bergmann, U; Shastri, SD; Siddons, DP; Batterman, BW; Hastings, JB; Temperature Dependence of Nuclear Forward Scattering in -57Fe. Phys. Rev. B, 50, 5957-5961 (1994).

8. Bergmann, U; Hastings, JB; Siddons, DP; Time Evolution of Incoherent Nuclear Scattering from 57Fe Excited with Synchrotron Radiation. Phys. Rev. B, 49, 1513-1516 (1994).

7. Siddons, DP; Bergmann, U; Hastings, JB; Witte, K; Baberschke, K; How to Open the Potential for Mössbauer Spectroscopy? Use a Corkscrew! Synchrotron Radiation News, 6.2, 34 (1993).

6. Nawrocky, RJ; Bergmann, U; Siddons, DP; A Bunchkiller for the NSLS X-ray Storage Ring. IEEE, Proc. of the 1993 Particle Accelerator Conference, 3, 2145-47 (1993).

5. Siddons, DP; Bergmann, U; Hastings, JB; Time-Dependent Polarization in Mössbauer Experiments with Synchrotron Radiation -Suppression of Electronic Scattering. Phys. Rev. Lett., 70, 359-362 (1993).

4. van Bürck, U; Siddons, DP; Hastings, JB; Bergmann, U; Hollatz, R; Nuclear Forward Scattering of Synchrotron Radiation. Phys. Rev. B, 46, 6207-6211 (1992).

3. Hastings, JB; Siddons, DP; van Bürck, U; Hollatz, R; Bergmann, U; Mössbauer Spectroscopy using Synchrotron Radiation. Phys. Rev. Lett., 66, 770-773, (1991).

2. Grote, M; Röhlsberger, R; Gerdau, E; Hellmich, R; Bergmann, U; Harsdorff, M; Chambers, M; Pfützner, W; Perparation and Characterization of GIAR Films for Monochromatization of Synchrotron Radiation, Hyperfine Interactions, 58, 2439-2444 (1990).

1. Röhlsberger, R; Grote, M; Bergmann, U; Gerdau, E; and others. Surface Roughness and Oxide Layers of Sputtered Polycrystalline Films. SPIE Proceedings, 26, 1160 (1989).